DeepCADe: A Deep Learning Architecture for the Detection of Lung Nodules in CT Scans

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dc.contributor.advisorJacob, Christian
dc.contributor.authorGolan, Rotem
dc.contributor.committeememberDenzinger, Joerg
dc.contributor.committeememberGavrilova, Marina
dc.contributor.committeememberFrayne, Richard
dc.contributor.committeememberCunningham, Ian
dc.date2018-02
dc.date.accessioned2018-01-25T18:05:24Z
dc.date.available2018-01-25T18:05:24Z
dc.date.issued2018-01-16
dc.description.abstractEarly detection of lung nodules in thoracic Computed Tomography (CT) scans is of great importance for the successful diagnosis and treatment of lung cancer. Due to improvements in screening technologies, and an increased demand for their use, radiologists are required to analyze an ever increasing amount of image data, which can affect the quality of their diagnoses. Computer-Aided Detection (CADe) systems are designed to assist radiologists in this endeavor. In this thesis, we present DeepCADe, a novel CADe system for the detection of lung nodules in thoracic CT scans which produces improved results compared to the state-of-the-art in this field of research. CT scans are grayscale images, so the terms scans and images are used interchangeably in this work. DeepCADe was trained with the publicly available Lung Image Database Consortium and Image Database Resource Initiative (LIDC-IDRI) database, which contains 1018 thoracic CT scans with nodules of different shape and size, and is built on a Deep Convolutional Neural Network (DCNN), which is trained using the backpropagation algorithm to extract volumetric features from the input data and detect lung nodules in sub-volumes of CT images. Considering only lung nodules that have been annotated by at least three radiologists, DeepCADe achieves a 2.1% improvement in sensitivity (true positive rate) over the best result in the current published scientific literature, assuming an equal number of false positives (FPs) per scan. More specifically, it achieves a sensitivity of 89.6% with 4 FPs per scan, or a sensitivity of 92.8% with 10 FPs per scan. Furthermore, DeepCADe is validated on a larger number of lung nodules compared to other studies (Table 5.2). This increases the variation in the appearance of nodules and therefore makes their detection by a CADe system more challenging. We study the application of Deep Convolutional Neural Networks (DCNNs) for the detection of lung nodules in thoracic CT scans. We explore some of the meta parameters that affect the performance of such models, which include: 1. the network architecture, i.e. its structure in terms of convolution layers, fully-connected layers, pooling layers, and activation functions, 2. the receptive field of the network, which defines the dimensions of its input, i.e. how much of the CT scan is processed by the network in a single forward pass, 3. a threshold value, which affects the sliding window algorithm with which the network is used to detect nodules in complete CT scans, and 4. the agreement level, which is used to interpret the independent nodule annotations of four experienced radiologists. Finally, we visualize the shape and location of annotated lung nodules and compare them to the output of DeepCADe. This demonstrates the compactness and flexibility in shape of the nodule predictions made by our proposed CADe system. In addition to the 5-fold cross validation results presented in this thesis, these visual results support the applicability of our proposed CADe system in real-world medical practice.en_US
dc.identifier.citationGolan, R. (2018). DeepCADe: A Deep Learning Architecture for the Detection of Lung Nodules in CT Scans (Doctoral thesis, University of Calgary, Calgary, Canada). Retrieved from https://prism.ucalgary.ca.en_US
dc.identifier.doihttp://dx.doi.org/10.11575/PRISM/5393
dc.identifier.urihttp://hdl.handle.net/1880/106312
dc.language.isoenen_US
dc.publisher.facultyScienceen_US
dc.publisher.institutionUniversity of Calgaryen
dc.rightsUniversity of Calgary graduate students retain copyright ownership and moral rights for their thesis. You may use this material in any way that is permitted by the Copyright Act or through licensing that has been assigned to the document. For uses that are not allowable under copyright legislation or licensing, you are required to seek permission.en_US
dc.subjectMachine Learningen_US
dc.subjectDeep Learningen_US
dc.subjectConvolutional Neural Networksen_US
dc.subjectDetection of lung nodules in CT scansen_US
dc.subject.classificationComputer Scienceen_US
dc.subject.classificationArtificial Intelligenceen_US
dc.subject.classificationRadiologyen_US
dc.titleDeepCADe: A Deep Learning Architecture for the Detection of Lung Nodules in CT Scansen_US
dc.typedoctoral thesisen_US
thesis.degree.disciplineComputer Scienceen_US
thesis.degree.grantorUniversity of Calgaryen_US
thesis.degree.nameDoctor of Philosophy (PhD)en_US
ucalgary.item.requestcopytrue
ucalgary.thesis.checklistI confirm that I have submitted all of the required forms to Faculty of Graduate Studies.en_US
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